Nearest Neighbor Distances Calculation with ImageJ

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===Author===
 
===Author===
[http://www.hpc.msstate.edu/directory/information.php?eid=2066 Yuxiong Mao]
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[mailto:maxm@predictivedesigntech.com Yuxiong Mao]
  
 
===Installation===
 
===Installation===
  
First download the plugin file from here: [[File:Nnd_.class]].
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Download the plugin file from [https://icme.hpc.msstate.edu/mediawiki/images/9/9a/Nnd_.class here].
  
Then copy the Nnd_.class file to the ImageJ/Plugins/Analyze folder and restart the ImageJ.   
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Copy the Nnd_.class file to the ImageJ/Plugins/Analyze folder and restart the ImageJ.   
  
Then, you can call the plugin at  Plugins ->Analyze -> Nnd.
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Then, you can call the plugin at  Plugins -> Analyze -> Nnd.
  
 
===Usage===
 
===Usage===
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The results window will display the X and Y coordinates of the particle's centroid.
 
The results window will display the X and Y coordinates of the particle's centroid.
  
Click Plugins ->Analyze -> Nnd to get the nearest neighber distances.
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Click Plugins -> Analyze -> Nnd to get the nearest neighbor distances.
  
 
== Problems ==
 
== Problems ==
  
If you encounter any problem using this plugin, please send email to [mailto:maxm@cavs.msstate.edu Yuxiong Mao]
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If you encounter any problem using this plugin, please send an email to [mailto:maxm@predictivedesigntech.com Yuxiong Mao]

Latest revision as of 10:01, 4 March 2016

Contents

[edit] Introduction

This is a imageJ plugin for calculating the nearest neighbor distances of the particles.

[edit] Author

Yuxiong Mao

[edit] Installation

Download the plugin file from here.

Copy the Nnd_.class file to the ImageJ/Plugins/Analyze folder and restart the ImageJ.

Then, you can call the plugin at Plugins -> Analyze -> Nnd.

[edit] Usage

Follow the last step (step 8) of ImageJ Beginner Tutorial 1.

Click Analyze -> Set Measurements, Make sure "Centroid" is checked.

Click Analyze -> Analyze Particles.. and then ok.

The results window will display the X and Y coordinates of the particle's centroid.

Click Plugins -> Analyze -> Nnd to get the nearest neighbor distances.

[edit] Problems

If you encounter any problem using this plugin, please send an email to Yuxiong Mao

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