Nearest Neighbor Distances Calculation with ImageJ
From EVOCD
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===Author=== | ===Author=== | ||
| − | [mailto:maxm@ | + | [mailto:maxm@predictivedesigntech.com Yuxiong Mao] |
===Installation=== | ===Installation=== | ||
| − | + | Download the plugin file from [https://icme.hpc.msstate.edu/mediawiki/images/9/9a/Nnd_.class here]. | |
| − | + | Copy the Nnd_.class file to the ImageJ/Plugins/Analyze folder and restart the ImageJ. | |
| − | Then, you can call the plugin at Plugins ->Analyze -> Nnd. | + | Then, you can call the plugin at Plugins -> Analyze -> Nnd. |
===Usage=== | ===Usage=== | ||
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The results window will display the X and Y coordinates of the particle's centroid. | The results window will display the X and Y coordinates of the particle's centroid. | ||
| − | Click Plugins ->Analyze -> Nnd to get the nearest | + | Click Plugins -> Analyze -> Nnd to get the nearest neighbor distances. |
== Problems == | == Problems == | ||
| − | If you encounter any problem using this plugin, please send email to [mailto:maxm@ | + | If you encounter any problem using this plugin, please send an email to [mailto:maxm@predictivedesigntech.com Yuxiong Mao] |
Latest revision as of 10:01, 4 March 2016
Contents |
[edit] Introduction
This is a imageJ plugin for calculating the nearest neighbor distances of the particles.
[edit] Author
[edit] Installation
Download the plugin file from here.
Copy the Nnd_.class file to the ImageJ/Plugins/Analyze folder and restart the ImageJ.
Then, you can call the plugin at Plugins -> Analyze -> Nnd.
[edit] Usage
Follow the last step (step 8) of ImageJ Beginner Tutorial 1.
Click Analyze -> Set Measurements, Make sure "Centroid" is checked.
Click Analyze -> Analyze Particles.. and then ok.
The results window will display the X and Y coordinates of the particle's centroid.
Click Plugins -> Analyze -> Nnd to get the nearest neighbor distances.
[edit] Problems
If you encounter any problem using this plugin, please send an email to Yuxiong Mao
